研究業績


発表論文 (2011年以降)

  1. Overview of the Molecular Mechanism of Bacterial Environmental Adaptation by Comprehensive Analysis
    T. Shimada, H. Yoshida
    Int. J. Mol. Sci. 2023, 24 7602.
  2. Metal-Responsive Transcription Factors Co-Regulate Anti-Sigma Factor (Rsd) and Ribosome Dimerization Factor Expression
    H. Yoshida, T. Shimada, A. Ishihama
    Int. J. Mol. Sci. 2023, 24(5), 4717.
  3. Ribosomal Hibernation-Associated Factors in Escherichia coli
    Y. Maki, H. Yoshida
    Microorganisms, 10, 33, 2022.
  4. Functional Sites of Ribosome Modulation Factor (RMF) Involved in the Formation of 100S Ribosome
    H. Yoshida, H. Nakayama, Y. Maki, M. Ueta, C. Wada, A. Wada
    Front. Mol. Biosci., 8, 661691, 2021.
  5. Coordinated Regulation of Rsd and RMF for Simultaneous Hibernation of Transcription Apparatus and Translation Machinery in Stationary-Phase Escherichia coli
    H. Yoshida, A. Wada, T. Shimada, Y. Maki, A. Ishihama
    Front. Genet., 10, 1153, 2019.
  6. Coordinated hibernation of transcriptional and translational apparatus during growth transition of Escherichia coli to stationary phase.
    H. Yoshida, T. Shimada, A. Ishihama
    mSystems, 3, e00057-18, 2018.
  7. Differential Regulation of rRNA and tRNA Transcription from the rRNA-tRNA Composite Operon in Escherichia coli
    H. Takada, T. Shimada, D. Dey, M. Z. Quyyum, M. Nakano, A. Ishiguro, H. Yoshida, K. Yamamoto, R. Sen, A. Ishihama
    PLOS ONE, 11, e0163057, 2016.
  8. 100Sリボソーム形成による翻訳制御とリボソームサイクル
    吉田 秀司，和田 明
    生化学 第88巻 第2号，p.253, 2016.
  9. Direct observation of DNA overwinding by reverse gyrase
    T. Ogawa, K. Yogo, S. Furuike, K. Sutoh, A. Kikuchi, K. Kinosita Jr.
    Proc Natl Acad Sci USA., 112, 7495, 2015.
  10. The 100S ribosome: ribosomal hibernation induced by stress
    H. Yoshida, A. Wada
    WIREs RNA, 5, 723, 2014.
  11. None of the Rotor Residues of F1-ATPase Are Essential for Torque Generation
    R. Chiwata, A. Kohori, T. Kawakami, K. Shiroguchi, S. Furuike, K. Adachi, K. Sutoh, Yoshida, K. Kinosita Jr.
    Biophys. J., 106, 2166, 2014.
  12. Molecular basis of ADP inhibition of vacuolar (V)-type ATPase/synthase
    J. Kishikawa, A. Nakanishi, S. Furuike, M. Tamakoshi, K. Yokoyama
    J. Biol. Chem., 289, 403, 2014.
  13. 膜タンパク質の1分子観察
    横山謙、古池　晶、岸川淳一
    「膜タンパク質構造研究」岩田想 編, 化学同人, p.187, 2013.
  14. Conservation of two distinct types of 100S ribosome in bacteria
    M. Ueta, C. Wada, T. Daifuku, Y. Sako, Y. Bessho, A. Kitamura, R. L. Ohniwa, K. Morikawa, H. Yoshida, T. Kato, T. Miyata, K. Namba, A. Wada
    Genes Cells, 18, 554, 2013.
  15. Involvement of cyclic AMP receptor protein in regulation of the rmf gene encoding the ribosome modulation factor in Escherichia coli
    T. Shimada*, H. Yoshida*, A. Ishihama
    J. Bacteriol., 195, 2212, 2013.
    (*: These authors contributed equally to this work.)
  16. YqjD is an inner membrane protein associated with stationary-phase ribosomes in Escherichia coli
    H. Yoshida, Y. Maki, S. Furuike, A. Sakai, M. Ueta, A. Wada
    J. Bacteriol., 194, 4178, 2012.
  17. Identification of phosphorylated serine-15 and -82 residues of HSPB1 in 5-fluorouracil-resistant colorectal cancer cells by proteomics
    A. Sakai, M. Otani, A. Miyamoto, H. Yoshida, E. Furuya, N. Tanigawa
    J. Proteomics, 75, 806, 2011.
  18. Torque generation and utilization in the moter enzyme F0F1-ATP synthase: half-torque F1 with short-sized pushrod helix and reduced ATP synthesis by half-torque F0F1
    E. Usukura, T. Suzuki, S. Furuike, N. Soga, E. Saita, T. Hisabori, K. Kinosita Jr., M. Yoshida
    J. Biol. Chem., 287, 1884, 2011.
  19. Torque generation in F1-ATPase devoid of the entire amino-terminal helix of the rotor that fills half of the stator orifice
    A. Kohori, R. Chiwata, MD. Hossain, S. Furuike, K. Shiroguchi, K. Adachi, M. Yoshida, K. Kinosita Jr.
    Biophys. J., 101, 188, 2011.
  20. Resolving stepping rotation in Thermus thermophilus H+ -ATPase/ synthase with an essentially drag-free probe
    S. Furuike, M. Nakano, K. Adachi, H. Noji, K. Kinosita Jr, K. Yokoyama
    Nature Communications, 2, 233, 2011.

学会発表 (2019年以降)

  1. 第45回日本分子生物学会年会シンポジウム「環境を利用する遺伝子とその機能発現のしくみ」(2023, 神戸)
    Response to environmental stresses through transcriptional and translational regulation in bacteria (Yoshida)
  2. 第24回日本ＲＮＡ学会年会（2023, 那覇)
    Stress-responsive transcription factors that simultaneously regulate transcription and translation (Yoshida)
  3. 第19回21世紀大腸菌研究会 (2023, 鶴岡)
    転写と翻訳を同時に制御するストレス応答転写因子（吉田）　
  4. 第23回 日本RNA学会年会 (2022, 京都)
    Metal-responsive transcription factors that simultaneously regulate the expressions of anti-sigma factor Rsd and 100S ribosome formation factor RMF (Yoshida)
  5. 第44回 日本分子生物学会年会 (2021, 横浜)
    定常期の大腸菌におけるRNAの分解と蓄積 (牧)
    アンチシグマ因子(Rsd)とリボソーム二量体化因子(RMF)の発現を同時制御する金属応答転写因子 (吉田)
  6. 第74回 日本物理学会年会 (2021, On-Line)
    ドライブシャフトの弾性をゼロにしたF1-ATPaseの回転 (古池)
  7. 25th Annual Meeting of the RNA Society (2020, On-Line)
    Coordinated Regulation of Rsd and RMF for Simultaneous Hibernation of Transcription Apparatus and Translation Machinery in Stationary-Phase Escherichia coli (Yoshida)
  8. 第42回 日本分子生物学会年会 (2019, 福岡)
    金属応答転写因子による100Sリボソーム形成の制御 (吉田)
  9. 第21回 日本RNA学会年会 (2019, 東京)
    転写・翻訳活性の同時制御に関係する転写因⼦ (吉田)
  10. 24th Annual Meeting of the RNA Society (2019, Poland)
    Transcription factors regulating activities of transcriptional and translational apparatus during growth transition in Escherichia coli (Yoshida)
  11. 第74回 日本物理学会年会 (2019, 福岡)
    ドライブシャフトの弾性がF1-ATPase の回転へ及ぼす影響 (古池)
  12. The 20th Takeda Science Foundation Symposium on BioSciences "RNA Neobiology" (2019, Japan)
    Coordinated hibernation of transcriptional and translational apparatus during growth transition of Escherichia coli to stationary phase (Yoshida)