PUBLICATIONS

Since 2011

  1. Overview of the Molecular Mechanism of Bacterial Environmental Adaptation by Comprehensive Analysis
    T. Shimada, H. Yoshida
    Int. J. Mol. Sci. 2023, 24 7602.
  2. Metal-Responsive Transcription Factors Co-Regulate Anti-Sigma Factor (Rsd) and Ribosome Dimerization Factor Expression
    H. Yoshida, T. Shimada, A. Ishihama
    Int. J. Mol. Sci. 2023, 24(5), 4717.
  3. Ribosomal Hibernation-Associated Factors in Escherichia coli
    Y. Maki, H. Yoshida
    Microorganisms, 10, 33, 2022.
  4. Functional Sites of Ribosome Modulation Factor (RMF) Involved in the Formation of 100S Ribosome
    H. Yoshida, H. Nakayama, Y. Maki, M. Ueta, C. Wada, A. Wada
    Front. Mol. Biosci., 8, 661691, 2021.
  5. Coordinated Regulation of Rsd and RMF for Simultaneous Hibernation of Transcription Apparatus and Translation Machinery in Stationary-Phase Escherichia coli
    H. Yoshida, A. Wada, T. Shimada, Y. Maki, A. Ishihama
    Front. Genet., 10, 1153, 2019.
  6. Coordinated hibernation of transcriptional and translational apparatus during growth transition of Escherichia coli to stationary phase.
    H. Yoshida, T. Shimada, A. Ishihama
    mSystems, 3, e00057-18, 2018.
  7. Differential Regulation of rRNA and tRNA Transcription from the rRNA-tRNA Composite Operon in Escherichia coli
    H. Takada, T. Shimada, D. Dey, M. Z. Quyyum, M. Nakano, A. Ishiguro, H. Yoshida, K. Yamamoto, R. Sen, A. Ishihama
    PLOS ONE, 11, e0163057, 2016.
  8. Direct observation of DNA overwinding by reverse gyrase
    T. Ogawa, K. Yogo, S. Furuike, K. Sutoh, A. Kikuchi, K. Kinosita Jr.
    Proc Natl Acad Sci USA., 112, 7495, 2015.
  9. The 100S ribosome: ribosomal hibernation induced by stress
    H. Yoshida, A. Wada
    WIREs RNA, 5, 723, 2014.
  10. None of the Rotor Residues of F1-ATPase Are Essential for Torque Generation
    R. Chiwata, A. Kohori, T. Kawakami, K. Shiroguchi, S. Furuike, K. Adachi, K. Sutoh, Yoshida, K. Kinosita Jr.
    Biophys. J., 106, 2166, 2014.
  11. Molecular basis of ADP inhibition of vacuolar (V)-type ATPase/synthase
    J. Kishikawa, A. Nakanishi, S. Furuike, M. Tamakoshi, K. Yokoyama
    J. Biol. Chem., 289, 403, 2014.
  12. Conservation of two distinct types of 100S ribosome in bacteria
    M. Ueta, C. Wada, T. Daifuku, Y. Sako, Y. Bessho, A. Kitamura, R. L. Ohniwa, K. Morikawa, H. Yoshida, T. Kato, T. Miyata, K. Namba, A. Wada
    Genes Cells, 18, 554, 2013.
  13. Involvement of cyclic AMP receptor protein in regulation of the rmf gene encoding the ribosome modulation factor in Escherichia coli
    T. Shimada*, H. Yoshida*, A. Ishihama
    J. Bacteriol., 195, 2212, 2013.
    (*: These authors contributed equally to this work.)
  14. YqjD is an inner membrane protein associated with stationary-phase ribosomes in Escherichia coli
    H. Yoshida, Y. Maki, S. Furuike, A. Sakai, M. Ueta, A. Wada
    J. Bacteriol., 194, 4178, 2012.
  15. Identification of phosphorylated serine-15 and -82 residues of HSPB1 in 5-fluorouracil-resistant colorectal cancer cells by proteomics
    A. Sakai, M. Otani, A. Miyamoto, H. Yoshida, E. Furuya, N. Tanigawa
    J. Proteomics, 75, 806, 2011.
  16. Torque generation and utilization in the moter enzyme F0F1-ATP synthase: half-torque F1 with short-sized pushrod helix and reduced ATP synthesis by half-torque F0F1
    E. Usukura, T. Suzuki, S. Furuike, N. Soga, E. Saita, T. Hisabori, K. Kinosita Jr., M. Yoshida
    J. Biol. Chem., 287, 1884, 2011.
  17. Torque generation in F1-ATPase devoid of the entire amino-terminal helix of the rotor that fills half of the stator orifice
    A. Kohori, R. Chiwata, MD. Hossain, S. Furuike, K. Shiroguchi, K. Adachi, M. Yoshida, K. Kinosita Jr.
    Biophys. J., 101, 188, 2011.
  18. Resolving stepping rotation in Thermus thermophilus H+ -ATPase/ synthase with an essentially drag-free probe
    S. Furuike, M. Nakano, K. Adachi, H. Noji, K. Kinosita Jr, K. Yokoyama
    Nature Communications, 2, 233, 2011.